Bioconductor BSgenome forge

Showing : BSgenome forge • reset

vote

replies

1.5k

views

bsgenome forge twobits_export bioconductor

5.7 years ago bioinagesh • 0

votes

replies

2.3k

views

bsgenome forge TwoBits_export

updated 7.6 years ago by Hervé Pagès 16k • written 7.6 years ago by stu111538 • 0

votes

replies

2.8k

views

bsgenome bsgenome forge

8.2 years ago • updated 7.8 years ago jodiera • 0

votes

replies

1.4k

views

bsgenome forge

8.8 years ago pj dias ▴ 60

votes

replies

1.5k

views

crisprseek grna searching bsgenome forge offtarget analysis

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by rajewski23 • 0

votes

1.5k

views

BSgenome forge 2bit bsgnome forge 2bit file

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by mbk0asis • 0

votes

1.6k

views

bsgenome forge bovine

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by mbk0asis • 0

7 results • Page 1 of 1

Recent ...

Replies

Answer: edgeR::cpm() results in negative values from raw counts of 0 by ATpoint ★ 4.8k

The function, when `log = TRUE` adds a small prior count to the counts before taking the log, avoiding taking the log of 0. If that prior i…

Answer: edgeR::cpm() results in negative values from raw counts of 0 by James W. MacDonald 68k

It's calculated exactly how you might expect (it's called counts/million counts for a reason). ``` > y <- matrix(rnbinom(20,size=1,mu=…

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Leonardo Collado Torres ★ 1.1k

Thanks for posting this Kinnary. See also https://github.com/LieberInstitute/spatialLIBD/issues/106 for more details on the background.

Answer: Gene Ontology (GO) Analysis by James W. MacDonald 68k

The main difference is that `enrichGO` fits a conventional hypergeometric test whereas `hyperGTest` allows you to do a conditional test as …

Comment: blockwiseModule crashes in the end and doesn't generate modules by drivingdirectionsonline • 0

Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…

Votes

edgeR::cpm() results in negative values from raw counts of 0

Comment: Differential expression analysis using two TCGA datasets

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

Awards • All